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Bulletin
17-21 November No. 2008.46
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From genes to farmers’ fields: waterproof rice
set to make waves in South Asia
Delhi, India – “Waterproof”
versions of popular varieties of rice, which can
withstand 2 weeks of complete submergence, have
passed tests in farmers’ fields with flying colors.
Several of these varieties are now close to official
release by national and state seed certification
agencies in Bangladesh and India, where farmers
suffer major crop losses because of flooding of up
to 4 million tons of rice per year. This is enough
rice to feed 30 million people.
The flood-tolerant versions of
the “mega varieties”—high-yielding varieties popular
with both farmers and consumers that are grown over
huge areas across Asia—are effectively identical to
their susceptible counterparts but recover after
severe flooding to yield well.
An early November tour of
research stations and farms in Bangladesh and India
led by David Mackill, IRRI senior rice breeder,
marked the successful completion of a project,
From genes to farmers’ fields: enhancing and
stabilizing productivity of rice in
submergence-prone environments, funded for the
past 5 years by Germany’s Federal Ministry
for Economic Cooperation and Development (BMZ). The
tour culminated with a 1-day wrap-up workshop at the
Central Rice
Research Institute (CRRI) in Cuttack, India,
7 November (photo above).
The new varieties were made
possible following the identification of a single
gene that is responsible for most of the submergence
tolerance. Thirteen years ago, Dr. Mackill, then at
the
University of California (UC) at Davis, and
Kenong Xu, his graduate student, pinpointed the gene
in a low-yielding traditional Indian rice variety
known to withstand flooding. Xu subsequently worked
as a postdoctoral fellow in the lab of Pamela
Ronald, a UC Davis professor (in photo below
inspecting a flood-tolerant variety on the Rangpur
station of the Bangladesh Rice Research Institute),
and they isolated the specific gene—called Sub1A—and
demonstrated that it confers tolerance to normally
intolerant rice plants. Dr. Ronald’s team showed
that the gene is switched on when the plants are
submerged.

A geneticist from
UC Riverside,
Julia Bailey-Serres, is leading the work to
determine exactly how Sub1A confers flood
tolerance. “Sub1A effectively makes the plant
dormant during submergence, allowing it to conserve
energy until the floodwaters recede,” she said.
Typically, rice plants will
extend the length of their leaves and stem in an
attempt to escape submergence. The Sub1A gene
is an evolutionarily new gene in rice found in only
a small proportion of the rice varieties originating
from eastern India and Sri Lanka. The activation of
this gene under submergence counteracts the escape
strategy.
continued

See Photos and Videos of the Week further below in
the right-hand column for additional background on
this work.
Click here and
here
to access a seven-part report on Pamela Ronald's
blog, Tomorrow's Table.
Click
here for more info on Sub1 on the IRRI Web
site.
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India-Africa conference tackles sustainable food
security
The India-Africa Conference on Cooperation for
Sustainable Food Security, jointly organized by
the Government of India, the
Indian Council for
Agricultural Research (ICAR), and the Indian
Farmers Fertilizer Cooperative (IFFCO), was held
on 10- 12
November at the NASC Complex,
Pusa, New Delhi.
The
participants included ministers, policymakers,
farmers, scientists, and private-sector
representatives from India and selected African
countries. To mark the occasion, an
exhibit highlighted developments in Indian
agriculture, focusing on India-Africa
collaborative efforts in the food sector. The
IRRI-India office put up a booth showcasing
IRRI-Africa collaboration in the fight against
hunger and poverty.
The IRRI exhibit showed the involvement of IRRI
in Africa since the 1970s and its collaboration
with the Africa Rice Center (WARDA), national
agricultural research and extension systems of
East and Southern Africa (ESA), and the
Instituto de Investigação
Agrícola de Moçambique (IIAM) to help farmers in
the region grow new rice varieties, learn modern
production techniques, and address productivity
constraints. Collaboration
between IRRI and WARDA in the ESA region focused
on rice breeding, varietal release, seed
production systems; crop production and
postharvest practices; rice value chain and
agricultural policy; and rice production improvement
at the village level.
IRRI’s program on Africa involves the
introduction and evaluation of improved rice
varieties
from IRRI, WARDA, and other research centers in
Africa; and the country-specific evaluation and
release of new varieties for local producers in
Ethiopia. A
new initiative led by IRRI and WARDA aims to
develop climate-hardy rice tailored to several rice-producing countries
on the continent.
Conference participants identified high-priority
collaborative activities to further strengthen
India-Africa partnership with IRRI assistance.
They likewise discussed
issues related to rice cultivation in India.
Various resource-conserving technologies for
rice and wheat developed by the Rice-Wheat
Consortium were also demonstrated.
For more details, contact Dr. Sheetal
Sharma in the IRRI-India Office.
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Researchers learn about writing better scientific papers
Nineteen
IRRI staff members and scholars participated in
the Scientific Writing Workshop held last 11-14
November at the Activity Room, Swaminathan Hall,
Training Center. CPS editor Tess Rola handled
the course, with assistance from Maria Angeli
Maghuyop, TC training specialist.
The 4-day workshop aimed to help scientists and
researchers develop skills in written
communication and make them more effective in
sharing their research results. Furthermore,
participants learned about the process of
organizing and writing a scientific paper and
having these published in international
journals.
This course highlighted the fact that the
responsibility of a scientist does not end after
the completion of laboratory and field
investigations. Results must be properly
conveyed to the scientific community, donor
organizations, policymakers, and potential
users. Only then can the scientist claim to have
made a real contribution to the existing body of
scientific knowledge. The information, if
communicated well, would capture the reader’s
interest and has a greater chance of reaching
its audience. Scientists must have the relevant
skills that enable them to make effective
written presentations that communicate
information clearly and concisely.
The methods used in the workshop were lectures,
discussions, and practice exercises. One major
output of the workshop was a working draft of
the scientific paper that each participant is
currently working on.
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Management memos
DG memo on
IFEA Elections
18 November 2008
We are pleased to announce that the IRRI
Filipino Employees Association (IFEA) has
scheduled the election of its Board of
Representatives for 26 November 2008. The
election shall be conducted from 8:00 a.m. to
12:00 noon at Sallimels Canteen. IFEA has
created an Election Committee, comprising the
following individuals, to oversee the election
process: Ramon Oliveros (chair) and members
Carlos Huelma, Zenaida Pascual, Priscilla Comia,
and Melencio Lalap
This Election Committee will post and e-mail
announcements pertaining to the 2008 IFEA
election in the coming days. The IRRI management
team fully supports this important activity, and
all IRRI Los Baños–based nationally recruited
staff are encouraged to participate in the
election. All OU heads are requested to provide
employees with the opportunity to proceed to the
polling place and cast their vote.
Thank you.
Robert Zeigler
Office of the DDG-R
4 November 2008
To: B.
Bouman, S. Mohanty, D. Brar, R. Buresh, D.
Johnson, R. Wassmann, S. Peng,
E. Humphreys, S. Savary, F. Horgan, K.
Kajisa, T. Metz, T. Clemeno
From: A. Dobermann
Subj:
IRRI Long-Term
Studies Committee (LTSC)
I would like to
invite you to be members of the IRRI
Long-Term Studies Committee (LTSC), with the
DDG-R as chair. The rationale for creating
the LTSC is that IRRI conducts a number of
long-term studies, including long-term
experiments conducted at IRRI and partner
institutions, as well as various social
science studies such as the loop surveys
conducted in Laguna and Central Luzon. These
studies provide international public goods
of strategic and unique nature, a role that
IRRI must continue to play. Likewise, new
medium- and long-term studies need to be
designed to tackle emerging issues in a
multidisciplinary manner. This will also
require designing new mechanisms for
managing and funding of such work.
Proposed
terms of reference:
1. Develop a long-term strategy, business
plan, and fund-raising/financing strategy
for managing all long-term studies conducted
by different research groups in IRRI, with
particular emphasis on ensuring
interdisciplinary research and staffing.
2. Design and
oversee the implementation of new
interdisciplinary long-term studies at field
and landscape levels to address critical
emerging issues, with particular emphasis on
drivers of change such as climate, water, and
socioeconomics, and encourage embedding
short-term studies to add value.
3. Ensure high-quality standards in conducting long-term
studies, data management, data analysis, and
reporting.
4. Design an
effective data management system that
enables wide access to long-term data by
users in and outside IRRI.
5. Develop an
effective publication and communication
strategy on results (interpretations) and
data from the long-term studies.
6. Provide
information and guidance for strategic
research planning on emerging issues in rice
systems.Thank you for
accepting this important assignment.
***
18 November 2008
Rumors
are already spreading about plans for a
change in IRRI's research management
structure. This is to confirm that we
are indeed starting to explore such
possible changes. Several recent
developments and our overall vision for
the future suggest that we should
creatively think about any potential
improvements that can be made in the
efficiency of our research and the
supporting management structures and
processes. We have entered a phase of
rapid growth, driven by an increasing
amount of restricted funding,
including many new projects supported by
non-CGIAR donors. This presents huge new
opportunities for strengthening IRRI and
increasing its impact for addressing
major development challenges. It will
also change the pace of our work. Hence,
it is imperative that we continue to
evaluate ourselves and seek out all
opportunities for being most efficient
in managing our R&D work.
As a
first step, a general model for a more
decentralized, product-oriented research
structure was presented and discussed
during the IPC meeting on Thursday. The
general agreement was to further pursue
these initial ideas and, through a more
detailed analysis, develop a full
proposal for a new research program and
management structure, including the
required changes in key support
services.
As a
next step, a small task force composed
of Hei Leung, Dave Mackill, Bas Bouman,
Ruaraidh Sackville-Hamilton, Samarendu
Mohanty, and me will meet in
early December to further develop this
plan. It is our goal to share it for
discussion with all IRRI staff in
mid-January.
Achim
Dobermann
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Beth
Johnson passes away
Harwant Khush reports that Beth Johnson,
spouse of Stan Johnson, IRRI agricultural
economist (1966-68), passed away in her
sleep on 3 November.
She was very active in the IRRI Reunion at
Davis in June 2006 during which she
participated in Gene Hettel's ongoing IRRI
pioneer interviews (center in photo with
husband Stan and friend Carolyn Moomaw
Wilhelm). She was a good friend always with
a positive attitude. This is very unexpected
news and our sympathies go out to Stan and
family. We have no news of the funeral
arrangements. Friends can contact Stan at
his email address: Stanj662@aol.com
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IRRI FC kicks grass at the Alaska Cup 2008
The
IRRI Football Club (IRRI FC) joined the 13th
Alaska Football Cup, last Sunday 16 November) at
the Alabang Country Club Football Field, Ayala
Alabang. Various schools and football clubs from
all over the Philippines participated in the
country’s largest and most prestigious annual
football tournament.
The ladies'
team (in photo with the men) was composed of
IRRI staff Ranee Mabesa, Reena Sellamuthu, Mary
Burac, Sarah Beebout (CESD), Darlene Sanchez,
Sheryl Sierra, Rona Andam (PBGB), Mae Merluza (GRC),
Clerisse Ramos (RMQA), and reinforcements Mutya
Aller, Dens Detera and Mildred Mejino.
The ladies were grouped with Los Borrachos, Alabang Grins,
Pampanga Agricultural College FC, Brent IS –
Subic, and Makati FC in the Ladies' Open
Division.
The Alabang
Grins eventually won the group stage and moved
on to the advanced stages of the competition.
Mutya Aller, Mae Merluza, and Sarah Beebout
(shown defending in photo right) contributed one
goal each in their campaign.
The men's
team (in photo with the women) was composed of
Kofi Bimpong, Reza Mohammadi (PBGB), Tanguy
Lafarge, Mervin Manalili (CESD), Anthony Telosa
(GRC) and Kenneth Ortiz (Lazaga). Enrico Mercado
(formerly from PBGB), Jojo Telosa (brother of
Anthony), Bayani Vandenbroek, Joey and Alvin
(from Canlubang) completed the lineup.
IRRI FC,
Pampanga Agricultural College FC, Kaya FC, San
Jose del Monte FC Xavier Alumni FC completed
bracket C of the Men's Open Division.
The men's
team managed to sneak in one win before bowing
out of the group stage. Tanguy Lafarge (photo
left) and Bayani Vandebroek both scored goals
for the team.
The backup forces and
friends who came to cheer the team were Sheila
Quilloy (GRC), Vivay Salazar (CRIL), EJ Azucena
(ISAAA), Jelo Magat (FOP), Bill Sta. Clara
(CPS), Boggs Panaligan (formerly from CPS), and
Ems
Caceres.
Lorraine Cappleman (PBGB) was the overall
coordinator for both teams. Transportation was
provided by CERS.
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Badminton standings as of 17 November |
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Team |
W |
L |
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Green |
40 |
28 |
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Blue |
36 |
32 |
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Yellow |
32 |
36 |
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Red |
28 |
40 |
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Click
here (or click individual stories
below) to view news and features of the past week
and earlier about rice from Web sites worldwide.
The 3,600-story database is now searchable going
back to June 2005. Give it a try!
Click here to
access a historic listing of 390 (299 since January
2007) newspaper and magazine articles and features,
audio and video clips, and external Web sites
dating back to 14 June 1968, which feature IRRI
staff and rice research.
Click here to
read about news and events at the TC via its Web
site.
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NEWS
ALERT
Click
here
(intenal campus only) to read news and feature stories and see more
about what's new via the DPPC Web site.
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Last
week (13 November)
One
year of seeding and seven years of weeding
by David
Johnson, senior weed scientist and CURE coordinator
Farmers
make large investments in time and money in controlling
weeds and yet they remain a major cause of crop losses. Integrated
weed management is often used by farmers to control weeds
and cultural measures often make an important contribution
to this. A greater understanding of weed ecology
would help us strengthen farmers’ defenses against losses
caused by weeds.
Click
here
to listen to the audio of his seminar and
click
here to follow along with his
PowerPoint.
This week (20 November)
Public-private sector partnerships for bringing new
technologies to farmers
by Achim Dobermann, DDG-R
IRRI needs to expand its efforts to faster deliver
better technologies to more rice farmers. To do this,
the Institute needs to develop new partnerships with
NGOs and the private sector. This seminar will provide
an overview of delivery systems proposed in the Cereal
Systems Initiative for South Asia (CSISA), a new
umbrella for using science and
technologies to accelerate short- and long-term cereal
production growth in South Asia’s most important grain
baskets.
Note
to Thursday Seminar presenters: Since
Thursday seminar presentations are receiving more
exposure via the new
beta.irri.org Web
site under "Science Talks," please make sure there are
no slides in your PowerPoint file that you would prefer
not to be available to the general public. If the presentation
as given needs some adjustment because of this, please
put a revised PowerPoint file in Gene Hettel's T: drive
folder and send him a note about it before the following
Tuesday after the presentation.
How NOT To Use
PowerPoint
by Comedian Don McMillan: YouTube
Nearly
100
past Thursday
and other special seminars (since 26 May 2005) have been archived
on the K:drive
at K:/IRRIThursdaySeminars.
PowerPoint files are included for all of these seminars, with
audio files (to follow along) available for most of them.
A new site
for easier access
to these archived seminars, along with a synopsis of each,
is also under development.
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Minding
safety--November feature
Once
a month, SSS provides information, reminders,
tips, instructions, and advice from lessons learned involving
safety, security, health, and the environment.
Click
here to view the November PowerPoint issue of Minding
Safety.
Because
our Institute has different divisions, units, laboratories,
and headhouses with respective responsibilities, we all
know that safety is not limited to SSS alone.
SAFETY
IS EVERYBODY’S RESPONSIBILITY. What we would like to
do is establish a way of imparting our research to you,
to help you internalize this knowledge so that you too start
MINDING SAFETY.
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17
November:
2000, To mark the 40
years of strong partnership between the Institute and
Thailand, the IRRI Liaison Office in Bangkok sponsors and
kicks off 2 days of events in the country.
18 November:
2004, In celebration of the International Year
of Rice 2004,
Host Country Day
held at IRRI
attracts approximately 125 officials from various branches
of the Philippine Government.
19
November:
2005,
More than 700 rice scientists and researchers from 20
countries arrive for the 5-day
5th International Rice
Genetics Symposium
at the EDSA Shangri-la Hotel in Manila, which is the
largest scientific
meeting that IRRI has ever hosted in the Philippines.
Click here
to access information about obtaining the e-Proceedings.
21November:
2000,
The
Cambodian Agricultural
Research and Development Institute (CARDI)
in Phnom Penh
is inaugurated,
which is the fruit of many years of work involving the
Cambodia-IRRI-Australia
Project (CIAP).
22 November:
2002, J.K. Ladha, soil nutritionist, is named a fellow of the
American Society of Agronomy (ASA) and Sant Virmani, plant
breeder, receives the International Service in Crop Science
Award from the Crop Science Society of America (CSSA).
Click
here to
view significant dates throughout the calendar year.
Click here
for the entire year in one pdf file. If you have some dates
to add or correct, please contact Gene Hettel.
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Library
corner
Ismail, A.M., Ella, E.S., Vergara, G.V.,
Mackill, D.J.
Mechanisms associated with tolerance to flooding
during germination and early seedling growth in
rice (Oryza sativa).
Ann. Bot. 2008 (e-first): 13 p.
2008. DOI: 10.1093/aob/mcn211
Rice literature alert (internal campus access only using
Internet Explorer)
(to
search the rice database, please
click
here)
Useful electronic resources
HathiTrust
HathiTrust is a digital repository for the
United States’ great research libraries,
bringing together the immense collections of 13 universities of the Committee on
Institutional Cooperation and the University of
California system. HathiTrust
is currently experimenting with large-scale full-text searching as part of an effort to create a
mechanism to search across the entire
repository. As an initial public beta of full-text search functionality. Currently available
is a simple mechanism to search across all of
the fully viewable works (both those in the
public domain and those for which permission is
required) and a sprinkling of search-only works
(i.e., in-copyright works where the text of the
work is not accessible). The size of the content
indexed is approximately 500,000 volumes, and
the majority of the works are fully viewable.
UNESCO resources on information literacy
This is a blog site that offers free links to
full-text publications on information literacy.
WorldWideScience.org
This is a global science gateway—accelerating
scientific discovery and progress through a
multilateral partnership to enable federated
searching of national and international
scientific databases and portal.
Table
of contents alerts (for nonsubscribed
items only; to search a specific journal title,
click
here;
for electronic journals,
click
here)
Agricultural Water Management,
v. 95, no. 12, 2008
Applied Biochemistry and
Biotechnology,
v. 151, no. 2/3, 2008
Australian Journal of
Agricultural Research,
v. 59, no. 12, 2008
Australian Journal of
Experimental Agriculture,
v. 48, no. 12, 2008
Biochemical Systematics and
Ecology,
v. 36, no. 10, 2008
Carbohydrate Research,
v. 343, no. 18, 2008
Critical Reviews in
Microbiology,
v. 34, no. ¾, 2008
Culture and Organization,
v. 14, no. 4, 2008
European Journal of Agronomy,
v. 30, no. 1, 2009
Food Biotechnology,
v. 22, no. 4, 2008
Gene,
v. 427, no. ½, 2008
Journal of Plant Nutrition,
v. 31, no. 12, 2008
Oxford Development Studies,
v. 36, no. 4, 2008
Trends in Genetics,
v. 24, no. 11, 2008
Virology,
v. 382, no. 1, 2008
Open-access journals
Journal of Water Science,
v. 21, no. 4, 2008
Library
survey 2008
In the recent survey of library services,
suggestions for improvement of LDS services were
solicited from respondents via question no.13:
What improvements (or even new services) would
you like to see? We welcome your suggestions and
comments.
We received 83
suggestions. To see the suggestions and comments
to the last batch, nos.
71-83, and
the LDS replies, please go to
http://ricelib.irri.cgiar.org/screens/suggest.html
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Agronomy position available
The
Charles Sturt University in Wagga Wagga, NSW Australia
is seeking a motivated candidate for the position of
Lecturer/Senior Lecturer in Agronomy.
Further details are available at
www.csu.edu.au/jobs
- position number 111810 - full-time academic position.
Please pass this notice to those who may be interested.
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World Grains Trade Summit
in Singapore, 17-18 February 2009
The
theme for this 2-day event is “How
is the regional business evolving amid volatile
supplies & changing climate?”
Key
issues to be covered will include global
grain market outlook and where it is heading; can
the biofuel mandate roll back with rising food prices;
agriculture policy and investment outlook; will
the center of commodity exchange shift to Asia; commodity
price risk management; freight markets and impact
on grain movement.
The
contact
person
is
Hafizah Adam
(hafizah@cmtsp.com.sg;
+65 63469218).
Click
here for more information on the event Web
site.
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Call
for classic rice papers by IRRI staff
As
part of the materials being prepared for IRRI’s 50th
anniversary celebration in 2010, we would like to put
together a set of the classic rice science papers published
by IRRI scientists that have helped to change the world
or the way we are doing things today. Since many younger
(or future) scientists have probably never read some
of these classic papers, we would like to publish online
as many of them as we can (if we can get permission
from the various publishers to do so).
As
a starting point, we would like you to help us identify
these rice papers in your respective disciplines written
during three specific time periods:
a) The early days and discoveries (1960-75),
b) The period of rapid growth in rice science and rice
production (1976-90),
c) Recent years and the new areas that have changed
our science (since 1991).
Please
focus on selecting truly innovate works, that is, seminal
pieces of research and thinking, and try to nominate
1 or 2 papers in each of the three categories shown
above. We’ll assign a task force to select perhaps the
top 15-30 (5-10 for each period).
Please
send your nominations (authors, title, journal, and
date published, along with an electronic file of the
paper if you happen to have it available) to Gene Hettel
in CPS by 30 November 2008.
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Beta.irri.org on line for feedback
Over
the past few months, the Institute has been working
hard to develop and launch a new Web site for IRRI--no
mean feat. Thanks to the efforts of CPS staff, we are
now launching a beta version of the site, or work in
progress. If you have an opportunity, take a look at
http://beta.irri.org.
Please send any welcomed feedback to the Web community
manager, Albert Borrero.
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Information about AuthorAID
AuthorAID
is a pioneering program based at the International Network
for the Availability of Scientific Publications (INASP).
It is supported by the Swedish International Development
Cooperation Agency (SIDA) and the UK Department for
International Development (DFID). This new Web site
has been developed in conjunction with the Institute
of Learning and Research Technology at the University
of Bristol, UK.
AuthorAID
helps researchers in developing countries to publish
and otherwise communicate their work. It also serves
as a wider global forum to discuss and disseminate research.
Keys
features and benefits of AuthorAID are
1. A
community space for discussion and questions where researchers
can benefit from advice and insights from members across
the globe.
2. Access to a range of documents and presentations
on best practice in writing and publication and worldwide
training workshops on scientific writing.
3. Resources and advice on best practice towards identifying,
writing, and then submitting successful proposals for
research funding.
4. A chance to network with other researchers.
5. Personal mentoring by highly published researchers
and professional editors.
Register now
to take advantage of these benefits.
Click here
for an example.
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